The Dor has been powering multiple magic systems for even longer, and it hasn't run out. The spirits are leftovers from Virtuosity's splintering, not to mention that gathering them all together probably opened a perpendicularity that allowed access to the greater mass of Virtuosity's investiture in the SR. Look at it this way: Stars can burn for billions of years, outputting staggering levels of energy all the while, and yet we don't call them perpetual motion machines. 2,000 years is too short a time to conclusively extrapolate to infinity.