It is assumed (at least by a lot of people), that Sazed meant two new base metals (and one new alloy for each of them). Those four existed before (and I think Mistings of those metals were born back then as well, though I'm not sure if we have proof of that), but they were so rare, and their existence so suppressed by the Lord Ruler, that no one knew about them. Just like aluminium, duralumin and electrum.
And yes, atium was never supposed to be a normal part of the Allomantic table (nor was malatium), which is why gold and atium seemed so out of place. Atium is, as you say, Ruin's god metal. Atium was only produced by the Pits of Hathsin, which Kelsier destroyed in the first book. Most of the remaining atium in the world was burned during the final confrontation of Hero of Ages. As a side note, the bead that Elend ate at the end of WoA is Preservation's god metal - it is called lerasium, and it is very interesting. It's basically a solid version of the mists, or of the liquid that was in the Well.
We don't know if atium is being produced again in the current era, but we do know that Marsh has some, which he took from a kandra in HoA. Compounding that is what he's been using to stay alive for so long. (Though some have theorized that Sazed is also giving him atium, if his original stash has run out). So that's why it's not in any of the current tables - most people don't know about it, and it isn't available. Even if it was available, we don't know if atium Mistings even exist anymore. I think they do, but that they'll just never find out. Others think Sazed changed Allomancy to remove them.