I decided to figure this out myself since I couldn't find it listed anywhere. This is what I've found:
NY Times #1 Bestsellers
Adult Fiction Hardcover
Words of Radiance (Stormlight 2) #1 March 23, 2014
Towers of Midnight (WoT) #1 Nov 21, 2010
The Gathering Storm (WoT) #1 Nov 15, 2009
Memory of Light (WoT) #1 January 27, 2013
Young Adult Series
Firefight (Reckoners 2) #1 in YA Series, January 25, 2015
Steelheart (Reckoners 1) #1 in YA Series, October 13, 2013
Calamity (Reckoners 3) #1 in YA Series, February 25, 2016 / March 6, 2016 (also Earlier in the week, the book hit #1 on the Audible bestseller list (for all titles, all genres) )
Top Ranking for other books:
Adult Fiction Hardcover
Shadows of Self (Mistborn 5) #8 October 18, 2015
The Bands of Mourning (Mistborn 6) #6 February 4, 2016
Alloy of Law (Misborn 4) #7 October 21, 2015
Way of Kings (Stormlight 1) #7 September 19, 2010
Warbreaker #24 June 28, 2009
Young Adult
The Rithmatist, #6 YA, May 22, 2013
I don't believe there is a NYT Bestseller list for short stories, so that leaves out a number of them. Elantris was his first, before enough people knew him for a book of his to make it on the Bestseller list. I also don't see Alcatraz on any bestseller lists. That leaves the original three Mistborns. I don't think they made it to the best seller list either, but I have not been able to confirm. Can anyone else?